Detailed information of SNP:
|
SNP ID:
sf0628048714(Gbrowse)
Chromosome: chr06 Position: 28048714 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 90.91% | 9.09% |
| All Indica | 799 | 99.62% | 0.38% |
| All Japonica | 497 | 78.47% | 21.53% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 70.75% | 29.25% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0628048714 | G->A | LOC_Os06g46284(LOC_Os06g46284.1) | INTRON |
| sf0628048714 | G->A | LOC_Os06g46284(LOC_Os06g46284.2) | INTRON |