Detailed information of SNP:
|
SNP ID:
sf0628070773(Gbrowse)
Chromosome: chr06 Position: 28070773 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1230 | 98.21% | 1.79% |
| All Indica | 796 | 100.00% | 0.00% |
| All Japonica | 313 | 92.97% | 7.03% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 100.00% | 0.00% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 199 | 88.94% | 11.06% |
| Tropical Japonica | 72 | 100.00% | 0.00% |
| Japonica Intermediate | 42 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0628070773 | T->A | INTERGENIC | None |