Detailed information of SNP:
|
SNP ID:
sf0628085659(Gbrowse)
Chromosome: chr06 Position: 28085659 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 57.01% | 42.99% |
| All Indica | 799 | 94.49% | 5.51% |
| All Japonica | 497 | 1.61% | 98.39% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 375 | 94.93% | 5.07% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 90.52% | 9.48% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0628085659 | T->C | INTERGENIC | None |