Detailed information of SNP:
|
SNP ID:
sf0628102815(Gbrowse)
Chromosome: chr06 Position: 28102815 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1391 | 56.07% | 43.93% |
| All Indica | 773 | 93.79% | 6.21% |
| All Japonica | 497 | 1.41% | 98.59% |
| Aus | 67 | 35.82% | 64.18% |
| Indica I | 361 | 93.91% | 6.09% |
| Indica II | 208 | 95.67% | 4.33% |
| Indica Intermediate | 204 | 91.67% | 8.33% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 57.50% | 42.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0628102815 | G->A | LOC_Os06g46340(LOC_Os06g46340.1) | INTRON |