Detailed information of SNP:
|
SNP ID:
sf0628125155(Gbrowse)
Chromosome: chr06 Position: 28125155 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1399 | 58.83% | 41.17% |
| All Indica | 794 | 93.58% | 6.42% |
| All Japonica | 495 | 1.62% | 98.38% |
| Aus | 65 | 61.54% | 38.46% |
| Indica I | 373 | 93.30% | 6.70% |
| Indica II | 210 | 97.62% | 2.38% |
| Indica Intermediate | 211 | 90.05% | 9.95% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 66 | 0.00% | 100.00% |
| Group VI/Aromatic | 4 | 100.00% | 0.00% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0628125155 | A->G | INTERGENIC | None |