Detailed information of SNP:
|
SNP ID:
sf0628126870(Gbrowse)
Chromosome: chr06 Position: 28126870 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1389 | 55.72% | 44.28% |
| All Indica | 771 | 93.90% | 6.10% |
| All Japonica | 496 | 3.63% | 96.37% |
| Aus | 67 | 7.46% | 92.54% |
| Indica I | 361 | 96.12% | 3.88% |
| Indica II | 208 | 89.42% | 10.58% |
| Indica Intermediate | 202 | 94.55% | 5.45% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 93 | 9.68% | 90.32% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0628126870 | C->T | INTERGENIC | None |