Detailed information of SNP:
|
SNP ID:
sf0628128356(Gbrowse)
Chromosome: chr06 Position: 28128356 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1229 | 67.78% | 32.22% |
| All Indica | 797 | 91.59% | 8.41% |
| All Japonica | 332 | 22.29% | 77.71% |
| Aus | 63 | 6.35% | 93.65% |
| Indica I | 375 | 92.00% | 8.00% |
| Indica II | 212 | 92.92% | 7.08% |
| Indica Intermediate | 210 | 89.52% | 10.48% |
| Temperate Japonica | 217 | 33.64% | 66.36% |
| Tropical Japonica | 67 | 0.00% | 100.00% |
| Japonica Intermediate | 48 | 2.08% | 97.92% |
| Group VI/Aromatic | 1 | 0.00% | 100.00% |
| Intermediate | 36 | 69.44% | 30.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0628128356 | T->C | LOC_Os06g46360(LOC_Os06g46360.1) | INTRON |