Detailed information of SNP:
|
SNP ID:
sf0628132560(Gbrowse)
Chromosome: chr06 Position: 28132560 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 53.28% | 46.72% |
| All Indica | 799 | 89.99% | 10.01% |
| All Japonica | 497 | 1.41% | 98.59% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 375 | 89.60% | 10.40% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 211 | 87.68% | 12.32% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0628132560 | G->A | INTERGENIC | None |