Detailed information of SNP:
|
SNP ID:
sf0628245866(Gbrowse)
Chromosome: chr06 Position: 28245866 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1407 | 85.86% | 14.14% |
| All Indica | 791 | 77.24% | 22.76% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 65 | 92.31% | 7.69% |
| Indica I | 372 | 73.39% | 26.61% |
| Indica II | 212 | 83.02% | 16.98% |
| Indica Intermediate | 207 | 78.26% | 21.74% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 76.92% | 23.08% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0628245866 | A->G | INTERGENIC | None |