Detailed information of SNP:
|
SNP ID:
sf0628268115(Gbrowse)
Chromosome: chr06 Position: 28268115 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 56.77% | 43.23% |
| All Indica | 798 | 93.36% | 6.64% |
| All Japonica | 497 | 1.41% | 98.59% |
| Aus | 67 | 37.31% | 62.69% |
| Indica I | 375 | 94.13% | 5.87% |
| Indica II | 212 | 91.98% | 8.02% |
| Indica Intermediate | 211 | 93.36% | 6.64% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0628268115 | G->A | INTERGENIC | None |