Detailed information of SNP:
|
SNP ID:
sf0628274393(Gbrowse)
Chromosome: chr06 Position: 28274393 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 54.62% | 45.38% |
| All Indica | 799 | 90.99% | 9.01% |
| All Japonica | 497 | 1.81% | 98.19% |
| Aus | 65 | 20.00% | 80.00% |
| Indica I | 375 | 95.47% | 4.53% |
| Indica II | 213 | 79.81% | 20.19% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0628274393 | G->A | INTERGENIC | None |