Detailed information of SNP:
|
SNP ID:
sf0628338350(Gbrowse)
Chromosome: chr06 Position: 28338350 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1167 | 89.55% | 10.45% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 258 | 53.10% | 46.90% |
| Aus | 59 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 168 | 42.86% | 57.14% |
| Tropical Japonica | 54 | 88.89% | 11.11% |
| Japonica Intermediate | 36 | 47.22% | 52.78% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 37 | 97.30% | 2.70% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0628338350 | G->T | INTERGENIC | None |