Detailed information of SNP:
|
SNP ID:
sf0628352579(Gbrowse)
Chromosome: chr06 Position: 28352579 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 58.32% | 41.68% |
| All Indica | 799 | 96.25% | 3.75% |
| All Japonica | 497 | 1.21% | 98.79% |
| Aus | 67 | 35.82% | 64.18% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 91.08% | 8.92% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0628352579 | G->C | INTERGENIC | None |