Detailed information of SNP:
|
SNP ID:
sf0628363900(Gbrowse)
Chromosome: chr06 Position: 28363900 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 59.21% | 40.79% |
| All Indica | 799 | 97.00% | 3.00% |
| All Japonica | 497 | 1.21% | 98.79% |
| Aus | 67 | 50.75% | 49.25% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 57.50% | 42.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0628363900 | A->G | LOC_Os06g46690(LOC_Os06g46690.1) | INTRON |