Detailed information of SNP:
|
SNP ID:
sf0628385369(Gbrowse)
Chromosome: chr06 Position: 28385369 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 56.91% | 43.09% |
| All Indica | 799 | 93.49% | 6.51% |
| All Japonica | 497 | 1.41% | 98.59% |
| Aus | 66 | 46.97% | 53.03% |
| Indica I | 375 | 95.47% | 4.53% |
| Indica II | 213 | 89.20% | 10.80% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0628385369 | G->A | INTERGENIC | None |