Detailed information of SNP:
|
SNP ID:
sf0628392092(Gbrowse)
Chromosome: chr06 Position: 28392092 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 58.49% | 41.51% |
| All Indica | 799 | 95.87% | 4.13% |
| All Japonica | 497 | 1.61% | 98.39% |
| Aus | 67 | 47.76% | 52.24% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 213 | 90.61% | 9.39% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0628392092 | G->A | LOC_Os06g46754(LOC_Os06g46754.2) | INTRON |