Detailed information of SNP:
|
SNP ID:
sf0628527241(Gbrowse)
Chromosome: chr06 Position: 28527241 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1373 | 53.02% | 46.98% |
| All Indica | 759 | 87.22% | 12.78% |
| All Japonica | 496 | 2.02% | 97.98% |
| Aus | 65 | 32.31% | 67.69% |
| Indica I | 360 | 82.78% | 17.22% |
| Indica II | 198 | 88.89% | 11.11% |
| Indica Intermediate | 201 | 93.53% | 6.47% |
| Temperate Japonica | 334 | 1.50% | 98.50% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 39 | 56.41% | 43.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0628527241 | C->T | LOC_Os06g47050(LOC_Os06g47050.1) | INTRON |