Detailed information of SNP:
|
SNP ID:
sf0628528243(Gbrowse)
Chromosome: chr06 Position: 28528243 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 59.07% | 40.93% |
| All Indica | 799 | 94.37% | 5.63% |
| All Japonica | 497 | 2.21% | 97.79% |
| Aus | 61 | 49.18% | 50.82% |
| Indica I | 375 | 89.60% | 10.40% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0628528243 | A->G | INTERGENIC | None |