Detailed information of SNP:
|
SNP ID:
sf0628555576(Gbrowse)
Chromosome: chr06 Position: 28555576 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 61.66% | 38.34% |
| All Indica | 799 | 94.62% | 5.38% |
| All Japonica | 497 | 2.41% | 97.59% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 89.60% | 10.40% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0628555576 | A->G | LOC_Os06g47120(LOC_Os06g47120.1) | INTRON |