Detailed information of SNP:
|
SNP ID:
sf0628563884(Gbrowse)
Chromosome: chr06 Position: 28563884 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 52.78% | 47.22% |
| All Indica | 799 | 19.27% | 80.73% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 30.13% | 69.87% |
| Indica II | 213 | 6.10% | 93.90% |
| Indica Intermediate | 211 | 13.27% | 86.73% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0628563884 | C->G | INTERGENIC | None |