Detailed information of SNP:
|
SNP ID:
sf0628572937(Gbrowse)
Chromosome: chr06 Position: 28572937 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 53.60% | 46.40% |
| All Indica | 798 | 91.60% | 8.40% |
| All Japonica | 497 | 1.61% | 98.39% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 374 | 87.17% | 12.83% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0628572937 | C->T | INTERGENIC | None |