Detailed information of SNP:
|
SNP ID:
sf0628584508(Gbrowse)
Chromosome: chr06 Position: 28584508 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 57.56% | 42.44% |
| All Indica | 796 | 30.53% | 69.47% |
| All Japonica | 497 | 98.19% | 1.81% |
| Aus | 67 | 70.15% | 29.85% |
| Indica I | 373 | 34.58% | 65.42% |
| Indica II | 212 | 12.74% | 87.26% |
| Indica Intermediate | 211 | 41.23% | 58.77% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0628584508 | G->A | INTERGENIC | None |