Detailed information of SNP:
|
SNP ID:
sf0628589477(Gbrowse)
Chromosome: chr06 Position: 28589477 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 61.47% | 38.53% |
| All Indica | 798 | 94.61% | 5.39% |
| All Japonica | 497 | 2.01% | 97.99% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 374 | 89.30% | 10.70% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0628589477 | T->C | INTERGENIC | None |