Detailed information of SNP:
|
SNP ID:
sf0628612002(Gbrowse)
Chromosome: chr06 Position: 28612002 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 71.40% | 28.60% |
| All Indica | 797 | 94.98% | 5.02% |
| All Japonica | 497 | 28.37% | 71.63% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 90.08% | 9.92% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 17.61% | 82.39% |
| Tropical Japonica | 94 | 73.40% | 26.60% |
| Japonica Intermediate | 68 | 19.12% | 80.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0628612002 | T->C | INTERGENIC | None |