Detailed information of SNP:
|
SNP ID:
sf0628631223(Gbrowse)
Chromosome: chr06 Position: 28631223 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 61.54% | 38.46% |
| All Indica | 798 | 44.49% | 55.51% |
| All Japonica | 497 | 98.39% | 1.61% |
| Aus | 67 | 8.96% | 91.04% |
| Indica I | 375 | 57.87% | 42.13% |
| Indica II | 213 | 16.43% | 83.57% |
| Indica Intermediate | 210 | 49.05% | 50.95% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0628631223 | T->G | INTERGENIC | None |