Detailed information of SNP:
|
SNP ID:
sf0628632194(Gbrowse)
Chromosome: chr06 Position: 28632194 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 64.20% | 35.80% |
| All Indica | 799 | 44.43% | 55.57% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 40.30% | 59.70% |
| Indica I | 375 | 57.33% | 42.67% |
| Indica II | 213 | 16.90% | 83.10% |
| Indica Intermediate | 211 | 49.29% | 50.71% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0628632194 | A->G | INTERGENIC | None |