Detailed information of SNP:
|
SNP ID:
sf0628633577(Gbrowse)
Chromosome: chr06 Position: 28633577 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1383 | 79.03% | 20.97% |
| All Indica | 764 | 64.53% | 35.47% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 363 | 74.93% | 25.07% |
| Indica II | 198 | 33.33% | 66.67% |
| Indica Intermediate | 203 | 76.35% | 23.65% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0628633577 | C->T | INTERGENIC | None |