Detailed information of SNP:
|
SNP ID:
sf0628642423(Gbrowse)
Chromosome: chr06 Position: 28642423 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1197 | 95.24% | 4.76% |
| All Indica | 592 | 99.32% | 0.68% |
| All Japonica | 487 | 89.53% | 10.47% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 278 | 100.00% | 0.00% |
| Indica II | 164 | 98.78% | 1.22% |
| Indica Intermediate | 150 | 98.67% | 1.33% |
| Temperate Japonica | 325 | 84.31% | 15.69% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 37 | 94.59% | 5.41% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0628642423 | A->G | INTERGENIC | None |