Detailed information of SNP:
|
SNP ID:
sf0628647303(Gbrowse)
Chromosome: chr06 Position: 28647303 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1406 | 73.76% | 26.24% |
| All Indica | 787 | 56.93% | 43.07% |
| All Japonica | 497 | 96.38% | 3.62% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 371 | 66.58% | 33.42% |
| Indica II | 211 | 34.60% | 65.40% |
| Indica Intermediate | 205 | 62.44% | 37.56% |
| Temperate Japonica | 335 | 94.63% | 5.37% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0628647303 | G->A | LOC_Os06g47250(LOC_Os06g47250.1) | INTRON |