Detailed information of SNP:
|
SNP ID:
sf0628668364(Gbrowse)
Chromosome: chr06 Position: 28668364 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 52.75% | 47.25% |
| All Indica | 799 | 80.73% | 19.27% |
| All Japonica | 497 | 1.41% | 98.59% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 375 | 70.40% | 29.60% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 82.94% | 17.06% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0628668364 | C->T | INTERGENIC | None |