Detailed information of SNP:
|
SNP ID:
sf0628724902(Gbrowse)
Chromosome: chr06 Position: 28724902 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 67.04% | 32.96% |
| All Indica | 794 | 97.10% | 2.90% |
| All Japonica | 496 | 15.32% | 84.68% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 372 | 94.62% | 5.38% |
| Indica II | 212 | 98.58% | 1.42% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 19.40% | 80.60% |
| Tropical Japonica | 93 | 7.53% | 92.47% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 72.50% | 27.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0628724902 | G->A | LOC_Os06g47410(LOC_Os06g47410.1) | INTRON |