Detailed information of SNP:
|
SNP ID:
sf0628725344(Gbrowse)
Chromosome: chr06 Position: 28725344 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 60.51% | 39.49% |
| All Indica | 799 | 93.87% | 6.13% |
| All Japonica | 497 | 2.62% | 97.38% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 375 | 88.80% | 11.20% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 2.39% | 97.61% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0628725344 | A->G | LOC_Os06g47410(LOC_Os06g47410.1) | INTRON |