Detailed information of SNP:
|
SNP ID:
sf0628740926(Gbrowse)
Chromosome: chr06 Position: 28740926 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1330 | 97.52% | 2.48% |
| All Indica | 794 | 100.00% | 0.00% |
| All Japonica | 414 | 92.27% | 7.73% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 370 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 272 | 90.44% | 9.56% |
| Tropical Japonica | 89 | 100.00% | 0.00% |
| Japonica Intermediate | 53 | 88.68% | 11.32% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0628740926 | T->C | INTERGENIC | None |