Detailed information of SNP:
|
SNP ID:
sf0628750781(Gbrowse)
Chromosome: chr06 Position: 28750781 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 50.39% | 49.61% |
| All Indica | 796 | 78.89% | 21.11% |
| All Japonica | 497 | 1.61% | 98.39% |
| Aus | 66 | 59.09% | 40.91% |
| Indica I | 373 | 89.01% | 10.99% |
| Indica II | 213 | 55.87% | 44.13% |
| Indica Intermediate | 210 | 84.29% | 15.71% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0628750781 | T->A | INTERGENIC | None |