Detailed information of SNP:



SNP ID: sf0628750781(Gbrowse)

Chromosome: chr06

Position: 28750781
Major allele: T

Minor allele: A

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of A(minor allele)
All1415 50.39% 49.61%
All Indica796 78.89% 21.11%
All Japonica497 1.61% 98.39%
Aus66 59.09% 40.91%
Indica I373 89.01% 10.99%
Indica II213 55.87% 44.13%
Indica Intermediate210 84.29% 15.71%
Temperate Japonica335 0.90% 99.10%
Tropical Japonica94 3.19% 96.81%
Japonica Intermediate68 2.94% 97.06%
Group VI/Aromatic14 92.86% 7.14%
Intermediate42 59.52% 40.48%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0628750781 T->A INTERGENIC None