Detailed information of SNP:
SNP ID:
sf0628750781(Gbrowse)
Chromosome: chr06 Position: 28750781 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
---|---|---|---|
All | 1415 | 50.39% | 49.61% |
All Indica | 796 | 78.89% | 21.11% |
All Japonica | 497 | 1.61% | 98.39% |
Aus | 66 | 59.09% | 40.91% |
Indica I | 373 | 89.01% | 10.99% |
Indica II | 213 | 55.87% | 44.13% |
Indica Intermediate | 210 | 84.29% | 15.71% |
Temperate Japonica | 335 | 0.90% | 99.10% |
Tropical Japonica | 94 | 3.19% | 96.81% |
Japonica Intermediate | 68 | 2.94% | 97.06% |
Group VI/Aromatic | 14 | 92.86% | 7.14% |
Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0628750781 | T->A | INTERGENIC | None |