Detailed information of SNP:
|
SNP ID:
sf0628751360(Gbrowse)
Chromosome: chr06 Position: 28751360 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 60.54% | 39.46% |
| All Indica | 799 | 93.99% | 6.01% |
| All Japonica | 497 | 2.01% | 97.99% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 375 | 88.53% | 11.47% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0628751360 | A->G | INTERGENIC | None |