Detailed information of SNP:
|
SNP ID:
sf0628758428(Gbrowse)
Chromosome: chr06 Position: 28758428 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1321 | 98.11% | 1.89% |
| All Indica | 787 | 100.00% | 0.00% |
| All Japonica | 414 | 93.96% | 6.04% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 364 | 100.00% | 0.00% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 277 | 93.14% | 6.86% |
| Tropical Japonica | 81 | 100.00% | 0.00% |
| Japonica Intermediate | 56 | 89.29% | 10.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0628758428 | T->G | INTERGENIC | None |