Detailed information of SNP:
|
SNP ID:
sf0628764616(Gbrowse)
Chromosome: chr06 Position: 28764616 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 96.47% | 3.53% |
| All Indica | 798 | 97.87% | 2.13% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 65 | 75.38% | 24.62% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 212 | 97.17% | 2.83% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0628764616 | G->A | LOC_Os06g47510(LOC_Os06g47510.1) | Non-Synonymous SNP |