Detailed information of SNP:
|
SNP ID:
sf0628765797(Gbrowse)
Chromosome: chr06 Position: 28765797 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1308 | 67.05% | 32.95% |
| All Indica | 788 | 93.65% | 6.35% |
| All Japonica | 401 | 10.97% | 89.03% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 365 | 88.77% | 11.23% |
| Indica II | 212 | 96.23% | 3.77% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 264 | 11.74% | 88.26% |
| Tropical Japonica | 78 | 3.85% | 96.15% |
| Japonica Intermediate | 59 | 16.95% | 83.05% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 38 | 71.05% | 28.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0628765797 | T->C | INTERGENIC | None |