Detailed information of SNP:
|
SNP ID:
sf0628790330(Gbrowse)
Chromosome: chr06 Position: 28790330 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 62.30% | 37.70% |
| All Indica | 799 | 94.24% | 5.76% |
| All Japonica | 497 | 6.84% | 93.16% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 375 | 88.80% | 11.20% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 7.46% | 92.54% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0628790330 | A->G | LOC_Os06g47550(LOC_Os06g47550.4) | UTR_3_PRIME |
| sf0628790330 | A->G | LOC_Os06g47550(LOC_Os06g47550.1) | INTRON |
| sf0628790330 | A->G | LOC_Os06g47550(LOC_Os06g47550.2) | UTR_3_PRIME |