Detailed information of SNP:
|
SNP ID:
sf0628850754(Gbrowse)
Chromosome: chr06 Position: 28850754 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 53.56% | 46.44% |
| All Indica | 799 | 90.74% | 9.26% |
| All Japonica | 495 | 1.82% | 98.18% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 375 | 86.67% | 13.33% |
| Indica II | 213 | 92.02% | 7.98% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 92 | 3.26% | 96.74% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0628850754 | G->T | INTERGENIC | None |