Detailed information of SNP:
|
SNP ID:
sf0628887901(Gbrowse)
Chromosome: chr06 Position: 28887901 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 67.16% | 32.84% |
| All Indica | 798 | 94.49% | 5.51% |
| All Japonica | 496 | 19.56% | 80.44% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 374 | 89.30% | 10.70% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 334 | 26.35% | 73.65% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0628887901 | T->A | INTERGENIC | None |