Detailed information of SNP:
|
SNP ID:
sf0628892077(Gbrowse)
Chromosome: chr06 Position: 28892077 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 86.82% | 13.18% |
| All Indica | 799 | 86.61% | 13.39% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 67 | 14.93% | 85.07% |
| Indica I | 375 | 85.33% | 14.67% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 80.09% | 19.91% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0628892077 | G->A | INTERGENIC | None |