Detailed information of SNP:
|
SNP ID:
sf0628930508(Gbrowse)
Chromosome: chr06 Position: 28930508 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 60.11% | 39.89% |
| All Indica | 797 | 84.32% | 15.68% |
| All Japonica | 497 | 15.49% | 84.51% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 374 | 77.27% | 22.73% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 210 | 84.29% | 15.71% |
| Temperate Japonica | 335 | 20.60% | 79.40% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 39 | 76.92% | 23.08% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0628930508 | G->A | INTERGENIC | None |