Detailed information of SNP:
SNP ID:
sf0629085141(Gbrowse)
Chromosome: chr06 Position: 29085141 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1410 | 96.38% | 3.62% |
All Indica | 790 | 93.92% | 6.08% |
All Japonica | 497 | 99.80% | 0.20% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 375 | 97.87% | 2.13% |
Indica II | 207 | 83.57% | 16.43% |
Indica Intermediate | 208 | 97.12% | 2.88% |
Temperate Japonica | 335 | 100.00% | 0.00% |
Tropical Japonica | 94 | 100.00% | 0.00% |
Japonica Intermediate | 68 | 98.53% | 1.47% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0629085141 | G->T | LOC_Os06g48070(LOC_Os06g48070.1) | INTRON |