Detailed information of SNP:
|
SNP ID:
sf0629092292(Gbrowse)
Chromosome: chr06 Position: 29092292 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1332 | 91.82% | 8.18% |
| All Indica | 716 | 85.47% | 14.53% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 333 | 81.38% | 18.62% |
| Indica II | 195 | 92.31% | 7.69% |
| Indica Intermediate | 188 | 85.64% | 14.36% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0629092292 | C->G | LOC_Os06g48080(LOC_Os06g48080.1) | Non-Synonymous SNP |