Detailed information of SNP:
|
SNP ID:
sf0629120021(Gbrowse)
Chromosome: chr06 Position: 29120021 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1350 | 78.15% | 21.85% |
| All Indica | 737 | 61.33% | 38.67% |
| All Japonica | 496 | 99.19% | 0.81% |
| Aus | 64 | 98.44% | 1.56% |
| Indica I | 335 | 50.15% | 49.85% |
| Indica II | 199 | 64.82% | 35.18% |
| Indica Intermediate | 203 | 76.35% | 23.65% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 93 | 97.85% | 2.15% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 40 | 87.50% | 12.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0629120021 | T->A | INTERGENIC | None |