Detailed information of SNP:
|
SNP ID:
sf0629121301(Gbrowse)
Chromosome: chr06 Position: 29121301 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1345 | 76.88% | 23.12% |
| All Indica | 732 | 59.56% | 40.44% |
| All Japonica | 495 | 99.19% | 0.81% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 335 | 51.34% | 48.66% |
| Indica II | 197 | 62.44% | 37.56% |
| Indica Intermediate | 200 | 70.50% | 29.50% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 92 | 98.91% | 1.09% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 11 | 100.00% | 0.00% |
| Intermediate | 40 | 82.50% | 17.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0629121301 | G->A | LOC_Os06g48140(LOC_Os06g48140.1) | Non-Synonymous SNP |