Detailed information of SNP:
|
SNP ID:
sf0629121926(Gbrowse)
Chromosome: chr06 Position: 29121926 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1366 | 75.18% | 24.82% |
| All Indica | 753 | 56.97% | 43.03% |
| All Japonica | 495 | 98.99% | 1.01% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 355 | 47.61% | 52.39% |
| Indica II | 199 | 61.31% | 38.69% |
| Indica Intermediate | 199 | 69.35% | 30.65% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 66 | 98.48% | 1.52% |
| Group VI/Aromatic | 12 | 91.67% | 8.33% |
| Intermediate | 40 | 82.50% | 17.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0629121926 | T->A | LOC_Os06g48140(LOC_Os06g48140.1) | Non-Synonymous SNP |