Detailed information of SNP:



SNP ID: sf0629121926(Gbrowse)

Chromosome: chr06

Position: 29121926
Major allele: T

Minor allele: A

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of A(minor allele)
All1366 75.18% 24.82%
All Indica753 56.97% 43.03%
All Japonica495 98.99% 1.01%
Aus66 96.97% 3.03%
Indica I355 47.61% 52.39%
Indica II199 61.31% 38.69%
Indica Intermediate199 69.35% 30.65%
Temperate Japonica335 99.40% 0.60%
Tropical Japonica94 97.87% 2.13%
Japonica Intermediate66 98.48% 1.52%
Group VI/Aromatic12 91.67% 8.33%
Intermediate40 82.50% 17.50%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0629121926 T->A LOC_Os06g48140(LOC_Os06g48140.1) Non-Synonymous SNP