Detailed information of SNP:
|
SNP ID:
sf0629123146(Gbrowse)
Chromosome: chr06 Position: 29123146 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1341 | 61.82% | 38.18% |
| All Indica | 735 | 35.10% | 64.90% |
| All Japonica | 496 | 97.78% | 2.22% |
| Aus | 61 | 83.61% | 16.39% |
| Indica I | 351 | 29.06% | 70.94% |
| Indica II | 194 | 30.41% | 69.59% |
| Indica Intermediate | 190 | 51.05% | 48.95% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 93 | 93.55% | 6.45% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 13 | 69.23% | 30.77% |
| Intermediate | 36 | 72.22% | 27.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0629123146 | G->A | LOC_Os06g48140(LOC_Os06g48140.1) | INTRON |