Detailed information of SNP:
|
SNP ID:
sf0629160830(Gbrowse)
Chromosome: chr06 Position: 29160830 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1336 | 86.53% | 13.47% |
| All Indica | 750 | 94.13% | 5.87% |
| All Japonica | 494 | 72.87% | 27.13% |
| Aus | 52 | 98.08% | 1.92% |
| Indica I | 342 | 88.01% | 11.99% |
| Indica II | 207 | 100.00% | 0.00% |
| Indica Intermediate | 201 | 98.51% | 1.49% |
| Temperate Japonica | 334 | 59.88% | 40.12% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 66 | 100.00% | 0.00% |
| Group VI/Aromatic | 1 | 100.00% | 0.00% |
| Intermediate | 39 | 97.44% | 2.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0629160830 | G->A | INTERGENIC | None |